You can build standard NGLess scripts using this wizard. See https://ngless.embl.de for more information.
If you use NGLess in your published work, please cite:
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language by Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork - Microbiome 2019 7:84; https://doi.org/10.1186/s40168-019-0684-8
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Every NGLess script starts by declaring which versions of the language it wants to use
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This script will process a single metagenome.
FastQ files should all be in the same directory with names matching the pattern *.[12].fq.gz (for example, sampleX.1.fq.gz and sampleX.2.fq.gz for a paired end sample).
ngless "1.5"
import "gmgc" version "1.0"
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